CALCULATES JITTER FOR SHIFT-CORRECTED PULSES

raw data: /workspace/projects/TES/data/20170126_TES5_n012_distinguishibility_20MHz_tau_vs_offset
processed data: /workspace/projects/TES/analysis/20170126_TES5_n012_distinguishibility_20MHz_tau_vs_offset_results/intrinsic_jitter

Height threshold = 0.0075
single photon traces via windowed area filtering


Code sections used to generate single photon trace and stderr:
from pulse_averaging:

time_p, signal_p = trace_ave(filelist[mask_1ph])
def one_pulse(x, x_offset=0, amplitude=1):
	"""convert the sample single photon pulse into a function
	that can be used in a fit
	"""
	x = x - x_offset
	return amplitude * np.interp(x, time_p, signal_p)

fit_model = Model(one_pulse)
time_f, signal_f, signal_var_f = fit_corrected_pulse(filelist[mask_1ph], fit_model,
									   t_initial,
									   t_final)